Книги, ръководства, учебници и помагала:

1. В.Симеонова, Възможностите на ms office 2007 в теоретично обяснени и решени задачи с приложени адаптации към ms office 2003, Стено, 2008, Варна, ISBN:978-954-449-392-9

Публикации с IF:

1. Milko Krachunov, Ognyan Kulev, Maria Nisheva, Valeriya Simeonova, Vladimir Dimitrov, Dimitar Vassilev.MACHINE LEARNING IN DE NOVO METAGENOMICS ERROR DISCOVERY, 2015,Proceeding of the Bulgarian Academy of Sciences, Vol 68, No4, pp.479-484 
2. V.Simeonova, K.Tasheva, G.Kosturkova, D.Vasilev. A soft computing QSAR adapted model for improvement of Golden root in vitro culture growth, 2013, BBE, IF: 0.760, DOI: 10.5504/BBEQ.2013.0013
3. V. Simeonova, I. Popov, D.Vassilev. 2012 Estimation of sequencing error rates present in genome databases, BBE, DOI: 10.5504/BBEQ.2012.0070, BIOMATH 2011 Conference, Special Issue, IF: 0.622

Публикации без IF:

1. Milko Krachunov, Dimitar Vassilev, Maria Nisheva, Ognyan Kulev, Valeriya Simeonova, Vladimir Dimitrov. Fuzzy indication of reliability in metagenomics NGS data analysis, 2015 (Procedia Computer Science, V.51,2015, p.2859-2863, DOI: 10.1016/j.procs.2015.05.05.448
2. Krachunov M., Kulev O., Simeonova V., Nisheva M., Vassilev D. (2014) Manageable workflows for processing parallel sequencing data. Serdica Journal of computing 8(1):101-114.
3. Kulev O., Nisheva M., Simeonova V., Vassilev D. (2013) Knowledge Representation in High-Throughput Sequencing. In: Proceedings of the 7th International Conference on Information Systems & Grid Technologies (ISGT), Sofia, May 31 - June 1,  2013, Sofia, St. Kliment Ohridski University Press, ISSN 1314-4855 , pp. 168-177.
4. D.Vasilev, V.Simeonova, M.Krachunov, E.Todorovska, M.Nisheva, O.Kulev, Deyan Peychev, Peter Petrov, Dimitar Shiyachki, Irena Avdjieva. Data Analysis for Next Generation Sequencing – Parallel Computing Approaches in de Novo Assembly Algorithms, Information Systems & Grid Technologies, Proceedings of The 6-th International Conference ISGT’2012, Sofia, Bulgaria, June 1–3., 2012.
5. M.Krachunov, I.Popov, P.Petrov, V.Simeonova, M.Nisheva, E.Todorovska, D.Vassilev, 2011, Data analysis of next generation sequencing metagenomics studies - parallel computing approaches in genome assembly algorithms, The 2nd Regional Conference “Supercomputing Applications in Science and Industry”: 20-21 September 2011 – Sunny Beach, Bulgaria
6. Т.Балабанов, И.Занкински, В.Симеонова, 2010, "Прогнозиране на времеви редове с изкуствени невронни мрежи и диференциална еволюция в разпределена среда", Работни статии на ИИТ, IIT/WP-268B, Май 2010
7. Т.Атанасова, В.Симеонова, 2008, Възможности за прогнозиране на борсови индекси с невронни мрежи и генетични алгоритми - Фирмите и пазарите в България в условията на евроинтеграция - продължаващата адаптация : Сборник доклади от юбилейна научно-практическа конференция - Варна, май 2008 г., Том I, с. 455-462, изд. Наука и икономика ИУ - Варна, 2008, ISBN: 978-954-21-0370-7

Абстракти и Постери:

1. V.Simeonova, A.Popov, 2012, Noise discovering and correction in NGS data using artificial neural networks, BIOMATH 2012 – In: Book of Abstracts of International Conference on Mathematical Methods and Models in Biosciences and School for Young Scientists, Юни 2012, София, България
2. V.Simeonova, K.Tasheva, G.Kosturkova, 2012, Improvement of in vitro micropropagation effciency of Golden Root by QSAR , BIOMATH 2012 - In: Book of Abstracts of International Conference on Mathematical Methods and Models in Biosciences and School for Young Scientists, Юни 2012, София, България
3. D.Vassilev, M.Krachunov, I.Popov, E. Todorovska, V.Simeonova, P.Szczesny, P.Siedlecki, U. Zelenkiewicz, P.Zelenkiewicz Algorithm for error detection in metagonomics NGS data. In: Book of Abstracts of COST BM1006 "NGS data analysis network" (SEQAhead) meeting in Brussels - 07-09.11.2011
4. M. Krachunov, I. Popov, V. Simeonova, I. Avdjieva,  P. Szczęsny, U. Zelenkiewicz, P. Zelenkiewicz, D. Vassilev. 2011, Detection and correction of errors in metagenomic 16S RNA parallel sequences, In: Book of Abstracts of The third StatSeq workshop on "Statistical challenges on the 1000€ genome sequences in plants": 14-15 April 2011 - Toulouse, France
5. I.Popov, V.Simeonova, D.Vasilev “Estimation of sequencing error rates present in database sequences of the Oriza Sativa(Japonica Cultivar group) genome” - 2nd workshop of EU COST action TD0801 Statistical challenges on the 1000€ genome sequences in plants (StatSEQ), Het Pand, Univ. of Ghent, Ghent, Belgium, May 20-21, 2010., p.34.